All functions
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ConsensusLoops()
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Subset an object of class LoopRanges using consensus options |
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DropLoops()
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Drop loops from LoopRanges objects using anchor and loop sizes |
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ElementsToRanges()
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Create a list of ranges objects from element data |
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ExportBED()
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Export a LoopRanges or italicsElementRanges object to a BED/BEDPE file |
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LinkedElements()
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Determines elements linked by loop anchors |
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LoopsToRanges()
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Create a list of ranges objects from looping data |
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ScaffoldElements()
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Finds elements within loops scaffolded by another set of elements |
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StackedElements()
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Finds elements stacked atop loop anchors |